CI: Address zizmor warnings and bump deps

Author: Saul-STFC

.github/workflows/build.yml

@@ -7,16 +7,21 @@ on:
       - .github/ISSUE_TEMPLATES/**
       - scripts/**
 
+permissions: {}
+
 jobs:
 
   build:
     runs-on: ubuntu-latest
+    permissions:
+      contents: read
     steps:
-      - uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b # v4.1.5
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           submodules: true
           fetch-depth: 0
-      - uses: actions/setup-node@60edb5dd545a775178f52524783378180af0d1f8 #tag=v4.0.2
+          persist-credentials: false
+      - uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
         with:
           node-version: '20'
           cache: 'npm'

.github/workflows/deploy.yml

@@ -10,6 +10,8 @@ on:
     - cron: '15 2 * * 1-5'
   workflow_dispatch:
 
+permissions: {}
+
 jobs:
   build:
     runs-on: ubuntu-latest

.github/workflows/pr_pre-commit.yml

@@ -4,14 +4,19 @@ name: pre-commit
 on:
   pull_request:
 
+permissions: {}
+
 jobs:
   pre-commit:
     runs-on: ubuntu-latest
+    permissions:
+      contents: read
     steps:
-      - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           fetch-depth: 0
-      - uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+          persist-credentials: false
+      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
         with:
           python-version: '3.12'
       - uses: pre-commit/action@2c7b3805fd2a0fd8c1884dcaebf91fc102a13ecd # v3.0.1

.github/workflows/ui.yml

@@ -7,12 +7,18 @@ on:
       - 'ui/**'
       - 'package-lock.json'
 
+permissions: {}
+
 jobs:
   build:
     runs-on: ubuntu-latest
+    permissions:
+      contents: read
     steps:
-      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
-      - uses: actions/setup-node@cdca7365b2dadb8aad0a33bc7601856ffabcc48e # v4.3.0
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+        with:
+          persist-credentials: false
+      - uses: actions/setup-node@820762786026740c76f36085b0efc47a31fe5020 # v7.0.0
         with:
           node-version: '24'
           cache: npm